Publications
- Whalen S, Inoue F, Ryu H, Fairr T, Markenscoff-Papadimitriou E, Keough K, Kircher M, Martin B, Alvarado B, Elor O, Cintron D, Williams A, Samee M, Thomas S, Krencik R, Ullian E, Kriegstein A, Shendure J, Pollen A, Ahituv N, Pollard KS (2023). Machine learning dissection of human accelerated regions in primate neurodevelopment. Neuron 111(6):857-873.e8. doi: 10.1016/j.neuron.2022.12.026
- Markenscoff-Papadimitriou E, Binyameen F, Whalen S, Price J, Lim K, Catta-Preta R, Pai EL-L, Mu X,Xu D, Pollard KS, Nord A, Matthew W. State, Rubenstein JLR (2022) Autism risk gene POGZ promotes chromatin accessibility and expression of clustered synaptic genes.Cell Reports 37(10):110089 https://doi.org/10.1016/j.celrep.2021.110089
- Cunniff MM, Markenscoff-Papadimitriou E, Ostrowski J, Rubenstein JL, Sohal VS. (2020). Altered hippocampal-prefrontal communication during anxiety-related avoidance in mice deficient for the autism-associated gene Pogz. Elife. 9:e54835. https://doi.org/10.7554/eLife.54835
- Markenscoff-Papadimitriou E*, Whalen S*, Przytycki P, Thomas R, Binyameen F, Nowakowski TJ,Kriegstein AR, Sanders SF, State MW, Pollard KS, and Rubenstein JL. (2020). A chromatin accessibility atlas of the developing human telencephalon. Cell. 182(1-16).https://doi.org/10.1016/j.cell.2020.06.002
- An JY, Lin K, Zhu L, Werling DM, Dong S, Brand H, Wang HZ, Zhao X, Schwartz GB, Collins RL,Currall BB, Dastmalchi C, Dea J, Duhn C, GilsonMC, Klei L, Liang L, Markenscoff-Papadimitriou E,Pochareddy S, Ahituv N, Buxbaum JD, Coon H, Daly MJ, Kim YS, Marth GT, Neale BM, Quinlan AR,Rubenstein JL, Sestan N, State MW, Willsey AJ, Talkowski ME, Devlin B, Roeder K, Sanders SJ. (2018).Genome-wide de novo risk score implicates promoter variation in autism spectrum disorder. Science.362(6420) https://doi.org/10.1126/science.aat6576
- Werling DM, Brand H, An JY, Stone MR, Zhu L, Glessner JT, Collins RL, Dong S, LayerRM, Markenscoff-Papadimitriou E, Farrell A, Schwartz GB, Wang HZ, Currall BB, Zhao X, Dea J,Duhn C, Erdman CA, Gilson MC, Yadav R, Handsaker RE, Kashin S, Klei L, Mandell JD, NowakowskiTJ, Liu Y, Pochareddy S, Smith L, Walker MF, Waterman MJ, He X, Kriegstein AR, Rubenstein JL,Sestan N, McCarroll SA, Neale BM, Coon H, Willsey AJ, Buxbaum JD, Daly MJ, State MW, Quinlan AR,Marth GT, Roeder K, Devlin B, Talkowski ME, Sanders SJ. (2018) Ananalytical framework for whole-genome sequence association studies and its implications for autism spectrum disorder. NatureGenetics. 50(5):727-736https://doi.org/10.1038/s41588-018-0107-y
- Markenscoff-Papadimitriou E, Allen W., Colquitt, B., Murphy, K., Goh, T., Monahan, K., Mosely, C.,Ahituv, N., and Lomvardas, S. (2014). Enhancer interaction networks as a means for singular olfactory receptor expression. Cell. 159(3):543-57. https://doi.org/10.1016/j.cell.2014.09.033