2024

Aguilera J., Duan J., Lee S., Ray M., Larschan E. The CLAMP GA-binding transcription factor regulates heat stress-induced transcriptional repression by associating with 3D loop anchors. bioRxiv 2023.10.08.561401; doi: https://doi.org/10.1101/2023.10.08.561401
Danev N*, Li G*, Duan, J, Van de Walle G. (2024), Comparative transcriptomic analysis of bovine mesenchymal 1 stromal cells reveals tissue-source and species-specific differences. https://doi.org/10.1016/j.isci.2024.108886
Riddle N., Biga P., Bronikowski A., Walters J., Wilkinson G., IISAGE Consortium: Duan J., Gamble A., Larschan E., Meisel R., Singh R., Webb A. Comparative analysis of animal lifespan. GeroScience 46, 171–181 (2024). https://doi.org/10.1007/s11357-023-00984-2

2023

Li G*, Yu X*, Portela Fontoura AB,* Javaid A, de la Maza-Escolà VS, Salandy NS, Fubini SL, Grilli E, McFadden JosephW*, Duan JE*. (2023). Transcriptomic regulations of heat stress response in the liver of lactating dairy cows. BMC Genomics 24:410. doi:10.1186/s12864-023-09484-1

Li, G., and Duan, J. (2022). Dosage compensation: A new player in X chromosome upregulation. Curr. Biol. 32, R1030–R1032. doi: 10.1016/j.cub.2022.09.027
Anne M Bronikowski, Richard P Meisel, Peggy R Biga, James R Walters, Judith E Mank, Erica Larschan, Gerald S Wilkinson, Nicole Valenzuela, Ashley Mae Conard, João Pedro de Magalhães, Jingyue Duan, Amy E Elias, Tony Gamble, Rita M Graze, Kristin E Gribble, Jill A Kreiling, Nicole C Riddle. Sex-specific aging in animals: Perspective and future directions. (2022) Aging Cell Doi: https://doi.org/10.1111/acel.13542
Duan JE, He Y, Jiang J. (2022). Editorial: Bridging (Epi-) Genomics and Environmental Changes: The Livestock Research. Front Genet https://doi.org/10.3389/fgene.2022.961232
Ranjitkar S, Duan JE, Srirattana K, Alqahtani F, Tulman ER, Mandoiu I, Venkitanarayanan K, Tian X. (2022). Transcriptomic Responses of Mycoplasma bovis Upon Treatments of trans-Cinnamaldehyde, Carvacrol, and Eugenol. Front Microbiol
Johnson, E.J., Duan, J., Srirattana, K. et al. Effects of intramuscularly injected plant-derived antimicrobials in the mouse model. Sci Rep12, 5937 (2022). https://doi.org/10.1038/s41598-022-09705-9

Ellie Duan*, Leila E. Rieder*, Megan Colonnetta, Annie Huang, Mary McKenney, Scott Watters, Girish Deshpande, William T. Jordan III, Nicolas L. Fawzi, Erica N. Larschan CLAMP and Zelda function together as pioneer transcription factors to promote Drosophila zygotic genome activation. eLife DOI: 10.7554/eLife.69937
[Abstract]

Duan J and Larschan E. Dosage Compensation: How to Be Compensated…Or Not? Curr Biol. 2019 Dec 2;29(23):R1229-R1231. doi: 10.1016/j.cub.2019.09.065.
[Abstract]
Duan JE*, Jiang Z*, Alqahtani F, Mandoiu I, Dong H, Zheng X, Marjani S, Chen J and Tian XC. Whole genome bisulfite sequencing of bovine in vivo gametes and preimplantation embryos. Front Genet 2019;10:512. doi: 10.3389/fgene.2019.00512.
[Abstract]
Duan JE*, Flock K*, Jue N, Zhang M, Jones A, Seesi S, Mandoiu I, Pillai S, Hoffman M, O’Neill R, Zinn S, Govoni K, Reed S, Jiang H, Jiang Z and Tian XC. Dosage Compensation and Gene Expression of the X Chromosome in Sheep. G3: Genes Genomes Genetics. 2019 Jan 9;9(1):305-314. doi: 10.1534/g3.118.200815.
[Abstract]
Duan JE, Shi W, Jue NK, Jiang Z, O’Neill R, Wolf E, Blomberg LA, Talbot N, Dong H, Zheng X, Chen J, and Tian XC. Dosage compensatory of X chromosome in bovine germline cells, early developmental embryos and somatic cells. Genome Biol Evol. 2019 Jan 1;11(1):242-252. doi: 10.1093/gbe/evy270.
[Abstract]
Duan JE*, Zhu L*, Dong H, Zheng X, Chen J, Jiang Z, and X. Tian. Abundance of mRNA for histone variants, histone, and DNA modification enzymes in bovine in vivo oocytes and pre-implantation embryos. Sci Rep 9, 1217 2019. doi: 10.1038/s41598-018-38083-4
[Abstract]

Duan JE*, Zhang M*, Flock K*, Seesi S, Mandoiu I, Jones A, Johnson E, Pillai S, Hoffman M, Mcfadden K, Jiang H, Reed S, Govoni K, Zinn S, Jiang Z and Tian XC. Effects of Maternal Nutrition on the Expression of Genomic Imprinted genes in Ovine Fetuses. Epigenetics. 2018;13(8):793-807. doi: 10.1080/15592294.2018.1503489.
[Abstract]
Jiang Z*, Lin J*, Dong H, Zheng X, Marjani SL, Duan JE, Ouyang Z, Chen J, and Tian XC. DNA methylomes of bovine gametes and in vivo produced preimplantation embryos. Biol. Reprod. 2018 Nov 1;99(5):949-959. doi: 10.1093/biolre/ioy138.
[Abstract]
Wang L, Jiang Z, Huang D, Duan J, Huang C, Sullivan S, Vali K, Yin Y, Zhang M, Wegrzyn J, Tian XC, and Tang Y. JAK/STAT3 regulated global gene expression dynamics during late-stage reprogramming process. BMC Genomics. 2018 Mar 6;19(1):183. doi: 10.1186/s12864-018-4507-2.
[Abstract]
Huang D, Wang L, Duan J, Huang C, Tian XC, Zhang M, and Tang Y. LIF-activated Jak signaling determines Esrrb expression during late-stage reprogramming. Biol. Open. 2018 Jan 22;7(1). doi: 10.1242/bio.029264. [Abstract]

Wen W, Luo X, Xia B, Guan J, Nie Y, Li L, Duan J, Suman SP, and Sun Q. Post-mortem oxidative stability of three yak (Bos grunniens) muscles as influenced by animal age. Meat Sci. 2015 Jul;105:121-5. doi: 10.1016/j.meatsci.2015.03.014.
[Abstract]

Feng Q, Jing Y, Huang Z, Duan J, Zhen C, Sun H, Zhong J, and Sun Q. Genotyping of Beijing family of Mycobacterium tuberculosis isolates from Sichuan with MIRU-VNTR. Journal of Sichuan University (Medical Science Edition) 2014 R378.911 [Abstract]
Undergraduate Honor Thesis: Duan J. Effect of eugenol and rutin hydrate on virulence factors of Vibrio parahaemolyticus. Sichuan University