Please check Google Scholar for more details
Click here for PubMed Bibliography
*Equal contribution. Undergraduate authors is in italic. Correspondence
2024
- Aguilera J., Duan J., Lee S., Ray M., Larschan E. The CLAMP GA-binding transcription factor regulates heat stress-induced transcriptional repression by associating with 3D loop anchors. bioRxiv 2023.10.08.561401; doi: https://doi.org/10.1101/2023.10.08.561401
- Danev N*, Li G*, Duan, J, Van de Walle G. (2024), Comparative transcriptomic analysis of bovine mesenchymal 1 stromal cells reveals tissue-source and species-specific differences. https://doi.org/10.1016/j.isci.2024.108886
- Riddle N., Biga P., Bronikowski A., Walters J., Wilkinson G., IISAGE Consortium: Duan J., Gamble A., Larschan E., Meisel R., Singh R., Webb A. Comparative analysis of animal lifespan. GeroScience 46, 171–181 (2024). https://doi.org/10.1007/s11357-023-00984-2
2023
- Li G*, Yu X*, Portela Fontoura AB,* Javaid A, de la Maza-Escolà VS, Salandy NS, Fubini SL, Grilli E, McFadden JosephW*, Duan JE*. (2023). Transcriptomic regulations of heat stress response in the liver of lactating dairy cows. BMC Genomics 24:410. doi:10.1186/s12864-023-09484-1
2022
- Li, G., and Duan, J. (2022). Dosage compensation: A new player in X chromosome upregulation. Curr. Biol. 32, R1030–R1032. doi: 10.1016/j.cub.2022.09.027
- Anne M Bronikowski, Richard P Meisel, Peggy R Biga, James R Walters, Judith E Mank, Erica Larschan, Gerald S Wilkinson, Nicole Valenzuela, Ashley Mae Conard, João Pedro de Magalhães, Jingyue Duan, Amy E Elias, Tony Gamble, Rita M Graze, Kristin E Gribble, Jill A Kreiling, Nicole C Riddle. Sex-specific aging in animals: Perspective and future directions. (2022) Aging Cell Doi: https://doi.org/10.1111/acel.13542
- Duan JE, He Y, Jiang J. (2022). Editorial: Bridging (Epi-) Genomics and Environmental Changes: The Livestock Research. Front Genet https://doi.org/10.3389/fgene.2022.961232
- Ranjitkar S, Duan JE, Srirattana K, Alqahtani F, Tulman ER, Mandoiu I, Venkitanarayanan K, Tian X. (2022). Transcriptomic Responses of Mycoplasma bovis Upon Treatments of trans-Cinnamaldehyde, Carvacrol, and Eugenol. Front Microbiol
- Johnson, E.J., Duan, J., Srirattana, K. et al. Effects of intramuscularly injected plant-derived antimicrobials in the mouse model. Sci Rep12, 5937 (2022). https://doi.org/10.1038/s41598-022-09705-9
2021
- Ellie Duan*, , , , , , , , , CLAMP and Zelda function together as pioneer transcription factors to promote Drosophila zygotic genome activation. eLife DOI: 10.7554/eLife.69937
[Abstract]
2019
- Duan J and Larschan E. Dosage Compensation: How to Be Compensated…Or Not? Curr Biol. 2019 Dec 2;29(23):R1229-R1231. doi: 10.1016/j.cub.2019.09.065.
[Abstract] - Duan JE*, Jiang Z*, Alqahtani F, Mandoiu I, Dong H, Zheng X, Marjani S, Chen J and Tian XC. Whole genome bisulfite sequencing of bovine in vivo gametes and preimplantation embryos. Front Genet 2019;10:512. doi: 10.3389/fgene.2019.00512.
[Abstract] - Duan JE*, Flock K*, Jue N, Zhang M, Jones A, Seesi S, Mandoiu I, Pillai S, Hoffman M, O’Neill R, Zinn S, Govoni K, Reed S, Jiang H, Jiang Z and Tian XC. Dosage Compensation and Gene Expression of the X Chromosome in Sheep. G3: Genes Genomes Genetics. 2019 Jan 9;9(1):305-314. doi: 10.1534/g3.118.200815.
[Abstract] - Duan JE, Shi W, Jue NK, Jiang Z, O’Neill R, Wolf E, Blomberg LA, Talbot N, Dong H, Zheng X, Chen J, and Tian XC. Dosage compensatory of X chromosome in bovine germline cells, early developmental embryos and somatic cells. Genome Biol Evol. 2019 Jan 1;11(1):242-252. doi: 10.1093/gbe/evy270.
[Abstract] - Duan JE*, Zhu L*, Dong H, Zheng X, Chen J, Jiang Z, and X. Tian. Abundance of mRNA for histone variants, histone, and DNA modification enzymes in bovine in vivo oocytes and pre-implantation embryos. Sci Rep 9, 1217 2019. doi: 10.1038/s41598-018-38083-4
[Abstract]
2018
- Duan JE*, Zhang M*, Flock K*, Seesi S, Mandoiu I, Jones A, Johnson E, Pillai S, Hoffman M, Mcfadden K, Jiang H, Reed S, Govoni K, Zinn S, Jiang Z and Tian XC. Effects of Maternal Nutrition on the Expression of Genomic Imprinted genes in Ovine Fetuses. Epigenetics. 2018;13(8):793-807. doi: 10.1080/15592294.2018.1503489.
[Abstract] - Jiang Z*, Lin J*, Dong H, Zheng X, Marjani SL, Duan JE, Ouyang Z, Chen J, and Tian XC. DNA methylomes of bovine gametes and in vivo produced preimplantation embryos. Biol. Reprod. 2018 Nov 1;99(5):949-959. doi: 10.1093/biolre/ioy138.
[Abstract] - Wang L, Jiang Z, Huang D, Duan J, Huang C, Sullivan S, Vali K, Yin Y, Zhang M, Wegrzyn J, Tian XC, and Tang Y. JAK/STAT3 regulated global gene expression dynamics during late-stage reprogramming process. BMC Genomics. 2018 Mar 6;19(1):183. doi: 10.1186/s12864-018-4507-2.
[Abstract] - Huang D, Wang L, Duan J, Huang C, Tian XC, Zhang M, and Tang Y. LIF-activated Jak signaling determines Esrrb expression during late-stage reprogramming. Biol. Open. 2018 Jan 22;7(1). doi: 10.1242/bio.029264. [Abstract]
2015
- Wen W, Luo X, Xia B, Guan J, Nie Y, Li L, Duan J, Suman SP, and Sun Q. Post-mortem oxidative stability of three yak (Bos grunniens) muscles as influenced by animal age. Meat Sci. 2015 Jul;105:121-5. doi: 10.1016/j.meatsci.2015.03.014.
[Abstract]
2014
- Feng Q, Jing Y, Huang Z, Duan J, Zhen C, Sun H, Zhong J, and Sun Q. Genotyping of Beijing family of Mycobacterium tuberculosis isolates from Sichuan with MIRU-VNTR. Journal of Sichuan University (Medical Science Edition) 2014 R378.911 [Abstract]
- Undergraduate Honor Thesis: Duan J. Effect of eugenol and rutin hydrate on virulence factors of Vibrio parahaemolyticus. Sichuan University