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Discovery that Connects

Science-based innovation for a changing world

Recent publications from the SIPS community – December 18, 2025

Geno-pheno characterization of crop rhizospheres: an integrated Raman spectroscopy and microbiome approach in conventional and organic agriculture.

Son, Y., He, P., Baldwin, M., Li, G., Wang, Z., Gu, A. Z., and Kao-Kniffin, J. 2025.  Frontiers in Microbiology Volume 16 – 2025.

Biogeographical and phylogenetic constraints on horizontal gene transfer and genome evolution in Streptomyces.

Hariharan, J., Andam, C. P., and Buckley, D. H.  Microbiology Spectrum 0:e02958-02925.

Prof Stephen P. Long, FRS (1950–2025).

Álvarez-Filip, L., Bai, E., Bernacchi, C. J., Bruno, R., Butterbach-Bahl, K., Byrne, M., Chen, I.-C., Chen, S., Cheung, W. W. L., Cotrufo, M. F., Dalu, T., Feng, X., Fu, Y., Gao, Y., Huszar, V. L. M., Janssens, I. A., Jeong, S., Jones, T. H., Joseph, S. D., Khanna, M., Kirschbaum, M. U. F., Kobayashi, K., LaRoche, J., Leakey, A. D. B., Li, X., Li, Y., Liu, L., Lohila, A., Luo, Y., McKechnie, A. E., Monadjem, A., Nolan, R. H., Pearson, R. G., Peng, S., Peñuelas, J., Piao, S., Robinson, S. A., Ryu, Y., Sage, R. F., Shekar, R. G., Xue, S., Smith, P., Souza, G. M., Spatari, S., Suggett, D. J., Wang, G., Way, D. A., Wu, J., and Xia, L. 2025. Global Change Biology 31:e70606.

Viral Silencing Suppressor Activity in Plants Modifies Aphid Antiviral Immunity and Fecundity.

Preising, S. E., Wilson, J. R., Parker, G. M., DeBlasio, S. L., Reeve, D., Chappie, J. S., and Heck, M. L.  Phytopathology 0:null.

Copper connections: coordinating transport, sensing and systemic signalling in plants.

Chia, J.-C., Zavodna, T.-O., Shatokhina, H., Kavulych, Y., and Vatamaniuk, O. K. 2025.  Quantitative Plant Biology 6:e36.

Synthetic Pentatricopeptide Repeat Proteins: Building a Toolkit for Precise RNA Control.

Lombana, J. M., Hanson, M. R., and Bentolila, S. 2025.  International Journal of Molecular Sciences 26:12033.

Temporal Dynamics of the Plasma Proteomic Landscape Reveals Maladaptation in ME/CFS Following Exertion.

Germain, A., Glass, K. A., Eckert, M. A., Giloteaux, L., and Hanson, M. R. 2025.  Molecular & Cellular Proteomics 24:101467.

Single cell epigenomic profiling identifies a distinct classical monocyte subset driving inflammation in Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME) 4815.

Iu, D. S., Ahmed, F., Fogarty, E., Franconi, C., Grenier, J., Hanson, M., and Grimson, A. 2025.  The Journal of Immunology 214.

GrainGenes: Genetics, Genomes, and Pangenomes.

Yao, E., Blake, V. C., Sharma, P. K., Poretsky, E., Michel, S., Birkett, C. L., Waring, D. J., Jannink, J.-L., Gu, Y. Q., Tiwari, V. K., Lazo, G. R., and Sen, T. Z. 2025.  Genetics.

DeltaBreed: A BrAPI-centric breeding data information system.

Yarnes, S. C., Palladino, N., Meidlinger, D. J., Philips, D. R., Sweeney, H. M., Mustafa, S. A., Mandych, M. L., Bouabane, S., Parsons, T. E., Slonecki, T. J., Zhao, D., Rife, T. W., Ellerbrock, B. J., Courtney, C., Selby, P., Mueller, L. A., Flores-Gonzalez, M., Aparicio, J. S., Al-Sham’aa, K., Raubach, S., Jannink, J.-L., Buckler, E. S., Beil, C. T., and Sheehan, M. J. 2025.  PLOS ONE 20:e0324104.

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