Lacy, K., Mormando, R., Smith, J.R., Gibney, P.A., Shaner, L.M., Burns, L.T. “Identification of the yeast mannoprotein gene HZY1 as a key genetic determinant for yeast-derived haze in beer. July 11, 2023. bioRxiv. July 11, 2023.
(DOI: 10.1101/2023.07.10.548400)
Chen, A., Gibney, P.A. Disruption of GRR1 in Saccharomyces cerevisiae rescues tps1- growth on fermentable carbon sources.” 2023. microPublication Biology
(DOI: 10.17912/micropub.biology.000927)
Carbon, H.N., Aplin, J.J., Jiang, G.Z., Gibney, P.A., Edwards, C.G. Fate of carbon in synthetic media fermentations containing Metchnikowia pulcherrima or Meyerozyma guilliermondii in the presence and absence of Saccharomyces cerevisiae. 2023. Food Microbiology. 114: 104308.
(DOI: 10.1016/j.fm.2023.104308)
Lewis AG, Gibney PA. A rapid method to determine growth-limiting concentrations for yeast in a microplate reader. 2023. Current Protocols. 3(5): e768.
(PMID: 37166239) (DOI: 10.1002/cpz1.768)
Chen, A., Gibney, P.A. Dietary trehalose as a bioactive nutrient in humans. 2023. Nutrients. 15(6): 1393.
(PMID: 36986123) (PMCID: PMC10054017) (DOI: 10.3390/nu15061393)
Mora, M., Wijaya, F., Jiang, G.Z., Gibney, P.A., Dando, R. “Sensory profiling of natural sweeteners and sucrose-sweetener binary mixtures.” 2023. Journal of Food Science. 88: 2984-2995.
(PMID: 37248752) (DOI: 10.1111/1750-3841.16610)
Rivera Flores, V.K., DeMarsh, T.A., Gibney, P.A., Alcaine, S.D. Fermentation of dairy-relevant sugars by Saccharomyces, Kluyveromyces, and Brettanomyces: an exploratory study with implications for the utilization of acid whey, part II. 2022. Fermentation. 8:257.
(DOI: 10.3390/fermentation8060257)
Chen, A., deLeuze, K., Gibney, P.A. “Intracellular trehalose accumulation via the Agt1 transporter promotes freeze-thaw tolerance in Saccharomyces cerevisiae.” 2022. Journal of Applied Microbiology. 133(4):2390-2402.
(PMID: 35801661) (DOI: 10.1111/jam.15700)
Chen, A., Smith, J.R., Tapia, H., Gibney, P.A. Characterizing phenotypic diversity of trehalose biosynthesis mutants in multiple wild strains of Saccharomyces cerevisiae. 2022. G3: Genes, Genomes, and Genomics. 12(11):jkac196.
(PMID: 35929793) (DOI: 10.1093/g3journal/jkac196)
Chen, A., Tapia, H., Goddard, J.M., Gibney, P.A., Trehalose and its applications in the food industry. 2022. Comprehensive Reviews in Food Science and Food Safety. 21(6): 5004-5037.
(PMID: 36201393) (DOI: 10.1111/1541-4337.13048)
Buffenstein, R. et al., The naked truth: a comprehensive clarification and classification of current ‘myths’ in naked mole-rat biology. 2022. Biological Reviews, Cambridge Philosophical Society. 97: 115-140.
(PMID: 34476892) (DOI: 10.1111/brv.12791)
Lewis, A.G., Caldwell, R., Rogers, J.V., Ingaramo, M., Wang, R.Y., Soifer, I., Hendrickson, D.G., McIsaac, R.S., Botstein, D., Gibney, P.A., Loss of major nutrient sensing and signaling pathways suppresses starvation lethality in electron transport chain mutants. 2021. Molecular Biology of the Cell. 32(22): ar39.
(supplement)
(PMID: 34668730) (DOI: 10.1091/mbc.E21-06-0314 )
Xiong, Z.R., Chen, A., Jiang, G.Z., Lewis, A.G., Sislak, C.D., Cobo, M., Worobo, R.W., Gibney, P.A., Evaluation of foodborne pathogen die-off in back-sweetened wine and apple cider models. 2021. Journal of Food Protection. 84(6): 1023-1032.
(PMID: 33465235) (DOI: 10.4315/JFP-20-351)
Rivera Flores, V.K., DeMarsh, T.A., Gibney, P.A., Alcaine, S.D., Fermentation of dairy-relevant sugars by Saccharomyces, Kluyveromyces, and Brettanomyces: an exploratory study with implications for the utilization of acid whey, part I. 2021. Fermentation. 7: 266.
(DOI: 10.3390/fermentation7040266)
Azizi, M., Davaji, B., Nguyen A.V., Mokhtare, A., Zhang, S., Dogan, B., Gibney, P.A., Simpson, K.W., Abbaspourrad, A., Biological small-molecule assays using gradient-based microfluidics. 2021. Biosensors and Bioelectronics. 178: 113038.
(PMID: 33556809) (DOI: 10.1016/j.bios.2021.113038)
Buffenstein, R., Lewis, K.N., Gibney, P.A., Narayan, V., Grimes, K.M., Smith, M., Lin T.D., Brown-Borg, H.M., Probing pedomorphy and prolonged lifespan in naked mole-rats and dwarf mice. 2020. Physiology. 35(2): 96-111.
(PMID: 32024425) (DOI: 10.1152/physiol.00032.2019)
Song, Y., Gibney, P.A., Cheng, L., Liu, S., Peck, G., Yeast assimilable nitrogen concentrations influence yeast gene expression and hydrogen sulfide production during cider fermentation. 2020. Frontiers in Microbiology. 11: 1264.
(PMID: 32670223) (DOI: 10.3389/fmicb.2020.01264)
Gibney, P.A., Chen, A., Schieler, A., Chen, J.C., Xu, Y., Hendrickson, D.G., McIsaac, R.S., Rabinowitz, J.D., Botstein, D., A tps1- persister-like state in Saccharomyces cerevisiae is regulated by MKT1. 2020. PLoS One. 15(5): e0233779.
(supplement)
(PMID: 32470059) (DOI: 10.1371/journal.pone.0233779)
Burns, L.T., Sislak, C.D., Gibbon, N.L., Saylor, N.R., Seymour, M.R., Shaner, L.M., Gibney, P.A., Improved functional assays and risk assessment for STA1+ strains of Saccharomyces cerevisiae. 2020. Journal of the American Society of Brewing Chemists.
(DOI: 10.1080/03610470.2020.1796175)
Bradley, P.H., Gibney, P.A., Botstein, D., Troyanskaya, O.G., Rabinowitz, J.D., Minor isozymes tailor yeast metabolism to carbon availability. 2019. mSystems. 4(1): e00170-18.
(PMID: 30834327) (DOI: 10.1128/mSystems.00170-18)
Hendrickson, D.G., Soifer, I., Wranik, B.J., Kim, G., Robles, M., Gibney, P.A., McIsaac,R.S., A new experimental platform facilitates assessment of the transcriptional and chromatin landscapes of aging yeast. 2018. eLife. 7: e39911.
(PMID: 30334737) (DOI: 10.7554/eLife.39911)
Xu, Y.F., Lu, W., Chen, J.C., Johnson, S.A., Gibney, P.A., Thomas, D.G., Brown, G., May, A.L., Campagna, S.R., Yakunin, A.F., Botstein, D., Rabinowitz, J.D., Discovery and functional characterization of a yeast sugar alcohol phosphatase. 2018. ACS Chemical Biology. 13(10): 3011 – 3020.
(PMID: 30240188) (DOI: 10.1021/acschembio.8b00804)
Gibney, P.A., Schieler, A., Chen, J.C., Bacha-Hummel, J.M., Botstein, M., Volpe, M., Silverman, S.J., Xu, Y., Bennett, B.D., Rabinowitz, J.D., Botstein, D., Common and divergent features of galactose-1-phosphate and fructose-1-phosphate toxicity in yeast. 2018. Molecular Biology of the Cell. 29(8): 897 – 910.
(supplement)
(PMID: 29444955) (DOI: 10.1091/mbc.E17-11-0666)
McIsaac, R.S., Lewis, K.N., Gibney, P.A., Buffenstein, R., From yeast to man: exploring the role of methionine restriction in extending eukaryotic life span. 2016. Annals of the New York Academy of Sciences. 1363: 155 – 170.
(PMID: 26995762) (DOI: 10.1111/nyas.13032)
Hackett, S.R., Zanotelli, V., Xu, W., Goya, J., Park, J., Perlman, D.H., Gibney, P.A., Botstein, D., Storey, J., Rabinowitz, J.D., Systems-level analysis of mechanisms controlling yeast metabolic flux. 2016. Science. 354 (6311): aaf2786-1 – aaf2786-15
(supplement)
(PMID: 27789812) (DOI: 10.1126/science.aaf2786)
Gibney, P.A., Schieler, A., Chen, J., Rabinowitz, J., Botstein, D., Characterizing the in vivo role of trehalose in Saccharomyces cerevisiae using the AGT1 transporter. 2015. Proceedings of the National Academy of Sciences. 112 (19): 6116 – 6121.
(supplement)
(PMID: 25918382) (DOI: 10.1073/pnas.1506289112)
Abrams, J.L., Verghese, J., Gibney, P.A., Morano, K.A., Hierarchical functional specificity of cytosolic Hsp70 nucleotide exchange factors in yeast. 2014. Journal of Biological Chemistry. 289 (19): 13,155 – 13,167
(PMID: 24671421) (DOI: 10.1074/jbc.M113.530014)
McIsaac, R., Gibney, P.A., Chandran, S., Benjamin, K., Botstein, D., Synthetic biology tools for programming gene expression without nutritional perturbations in Saccharomyces cerevisiae. 2014. Nucleic Acids Research. 42 (6): e48.
(supplement)
(PMID: 24445804) (DOI: 10.1093/nar/gkt1402)
Gibney, P.A.*, Lu, C.*, Caudy, A.A., Hess, D.C., Botstein, D., Yeast metabolic and signaling genes are required for heat-shock survival and have little overlap with the heat-induced genes. 2013. Proceedings of the National Academy of Sciences. 110 (46): E4393 – 4402.
* denotes equal contribution of authors
(supplement)
(PMID: 24167267) (DOI: 10.1534/g3.113.006585)
Gibney, P.A., Hickman, M.J., Bradley, P.H., Matese, J.C., Botstein, D., Phylogenetic Portrait of the S. cerevisiae Functional Genome. 2013. G3: Genes, Genomes, Genetics. 3 (8): 1335 – 1340.
(supplement)
(PMID: 23749449) (DOI: )
Welch, A.Z., Gibney, P.A., Botstein D., Koshland, D.E., TOR and RAS pathways regulate desiccation tolerance in Saccharomyces cerevisiae. 2013. Molecular Biology of the Cell. 24 (2): 115 – 128.
(supplement)
(PMID: 23171550) (DOI: 10.1091/mbc.E12-07-0524)
Wang, Y., Gibney, P.A., West, J.D., Morano, K.A., The yeast Hsp70 Ssa1 is a sensor for activation of the heat shock response by thiol-reactive compounds. 2012. Molecular Biology of the Cell. 23 (17): 3290 – 3298.
(supplement)
(PMID: 22809627) (DOI: 10.1091/mbc.E12-06-0447)
McIsaac R.S., Silverman, S.J., McClean, M.N., Gibney, P.A., Macinskas, J., Hickman, M.J., Petti, A.A., Botstein, D., Fast-acting and nearly gratuitous induction of gene expression and protein depletion in Saccharomyces cerevisiae. 2011. Molecular Biology of the Cell. 22 (22): 4447-4459.
(supplement)
(PMID: 21965290) (DOI: 10.1091/mbc.E11-05-0466)
Mandal, A.K.*, Gibney, P.A.*, Nillegoda, N.B., Thodoraki, M.A., Caplan, A.J., Morano, K.A., Hsp110 chaperones control client fate determination in the Hsp70-Hsp90 chaperone system. 2010. Molecular Biology of the Cell. 21 (9): 1439-1448.
* denotes equal contribution of authors
(supplement)
(PMID: 20237159) (DOI: 10.1091/mbc.e09-09-0779)
Shaner, L.*, Gibney, P.A.*, Morano, K.A., The Hsp110 protein chaperone Sse1 is required for yeast cell wall integrity and morphogenesis. 2008. Current Genetics. 54 (1): 1-11.
* denotes equal contribution of authors
(PMID: 18478233) (DOI: 10.1007/s00294-008-0193-y)
Gibney, P.A., Fries, T., Bailer, S., Morano, K.A., RTR1 is the yeast homolog of a novel family of RNA Polymerase II-binding proteins. 2008. Eukaryotic Cell. 7 (6): 938-948.
(PMID: 18408053) (DOI: 10.1128/EC.00042-08)